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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24240147_24321320_R

Intron Information:

Intron Rank:
140505
Intron Class:
major
Intron Phase:
Intron Coordinates:
24240147 - 24321320
Intron Length:
81174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTGATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
80
0.68
0.9
72.8
36.5
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
60.2
0.32
1.7
73.42
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022971
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024521
24239827 - 24326686
86860