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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24299464_24300587_R

Intron Information:

Intron Rank:
140510
Intron Class:
major
Intron Phase:
Intron Coordinates:
24299464 - 24300587
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCCCTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.12
0.8
74.7
41.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
90.2
0.9
0.6
84.6
23.3
Minor 5ss
23.3
-3.1
3.6
32.3
42.2
Minor BPS
67.8
0.55
2
84.76
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022971
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044538
24299249 - 24328827
29579