Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24321382_24326704_R

Intron Information:

Intron Rank:

140507

Intron Class:

major

Intron Phase:

Intron Coordinates:

24321382 - 24326704

Intron Length:

5323

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAG

U12 Branch Point Sequence:

TTCTGTTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

73.7

32.5

Major BPS

72.4

0.56

1.5

71.4

45.1

Major PPT

88.4

0.86

0.7

83.2

Minor 5ss

30.2

-2.3

3.3

37.1

47.5

Minor BPS

54.2

0.13

2.1

70.65

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022971

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036186

24321321 - 24328571

7251