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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24354052_24363623_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24354052 - 24363623
Intron Length:
9572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCATTGTTAACT
Flanking Amino Acid:
FLSGKFPYVQTLKNSKSLCS
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.5
0.84
0.7
82
28.7
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
62.9
0.48
2.1
80
42.2

Associated Gene:

Gene:
FAM53A
Ensembl Gene ID:
ENSAPLG00000015975
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022723
24340502 - 24401029
60528