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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24363717_24390386_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24363717 - 24390386
Intron Length:
26670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGCATGTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCAGAT
Flanking Amino Acid:
PSLDFFKMTRGFLSHTLIRG
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
77.6
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
75.3
0.57
1
67.9
42.3
Minor 5ss
38
-1.4
3.3
48.1
47.5
Minor BPS
49.9
0.07
2.1
79.47
41.8

Associated Gene:

Gene:
FAM53A
Ensembl Gene ID:
ENSAPLG00000015975
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022723
24340502 - 24401029
60528