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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24391190_24393449_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24391190 - 24393449
Intron Length:
2260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACCCATATCT
Flanking Amino Acid:
SGSLFPFEINEDSPWKALNG
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
32.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79
0.65
0.8
76.9
31.9
Minor 5ss
43.3
-0.7
2.8
60.6
43.7
Minor BPS
51.2
0.11
1.9
71.6
44.6

Associated Gene:

Gene:
FAM53A
Ensembl Gene ID:
ENSAPLG00000015975
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022723
24340502 - 24401029
60528
ENSAPLT00000016666
24353728 - 24401029
47302