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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2439997_2440953_F

Intron Information:

Intron Rank:
128431
Intron Class:
major
Intron Phase:
Intron Coordinates:
2439997 - 2440953
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTGATCCAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
88
0.85
0.6
84.7
23
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
43.5
-0.4
2.2
64.52
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019157
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031110
2392790 - 2441286
48497