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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24451249_24461379_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24451249 - 24461379
Intron Length:
10131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTGCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTCATTCTAACT
Flanking Amino Acid:
LSEPLKDFNTCLGNTSCVQC
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
69.6
32.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
37
-1.5
2.9
49.9
46.4
Minor BPS
50.7
0.1
1.7
68.3
43

Associated Gene:

Gene:
SLBP
Ensembl Gene ID:
ENSAPLG00000015989
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016692
24451044 - 24468417
17374