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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24461488_24462222_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24461488 - 24462222
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
ESQTSCQDNDDTCSGTPTKV
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
77.5
37.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86.1
0.81
0.8
78.1
40.1
Minor 5ss
39.5
-1.2
3.1
54.3
42.8
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
SLBP
Ensembl Gene ID:
ENSAPLG00000015989
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048275
24460489 - 24468417
7929
ENSAPLT00000031281
24460489 - 24468417
7929
ENSAPLT00000016692
24451044 - 24468417
17374