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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24464405_24464635_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24464405 - 24464635
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATATTACTT
Flanking Amino Acid:
FSRERRSSSGSSDSKESTAP
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.5
0.71
0.7
81
30.3
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
53.4
0.19
1.9
77.29
39.4

Associated Gene:

Gene:
SLBP
Ensembl Gene ID:
ENSAPLG00000015989
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048275
24460489 - 24468417
7929
ENSAPLT00000031281
24460489 - 24468417
7929
ENSAPLT00000016692
24451044 - 24468417
17374