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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24464696_24465244_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
24464696 - 24465244
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCATG
5'SS Class:
weak_major
3'SS Sequence:
TGAACTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTGACTTGAACT
Flanking Amino Acid:
MRTNVNKEIARYRRKLLINE
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
63.8
47.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
73.1
0.52
1
65.3
40.8
Minor 5ss
47.5
-0.2
2.9
66.1
45
Minor BPS
60.4
0.41
1.5
73.33
43.6

Associated Gene:

Gene:
SLBP
Ensembl Gene ID:
ENSAPLG00000015989
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048275
24460489 - 24468417
7929
ENSAPLT00000031281
24460489 - 24468417
7929
ENSAPLT00000016692
24451044 - 24468417
17374