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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24465350_24467672_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24465350 - 24467672
Intron Length:
2323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
AAATTCTTACTT
Flanking Amino Acid:
SGRAADGRLGSFTTPEGPGP
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
66.3
45.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
33.1
-1.9
3.1
41.6
45
Minor BPS
60
0.39
1.6
71.94
39.1

Associated Gene:

Gene:
SLBP
Ensembl Gene ID:
ENSAPLG00000015989
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048275
24460489 - 24468417
7929
ENSAPLT00000031281
24460489 - 24468417
7929
ENSAPLT00000016692
24451044 - 24468417
17374