About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24502036_24502334_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24502036 - 24502334
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGGGCA
5'SS Class:
major
3'SS Sequence:
GTTGATATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TATGTGTTGATA
Flanking Amino Acid:
MIELLLKMSLQILNAE
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1
62.1
36.4
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
64.7
0.33
1
55.5
44.3
Minor 5ss
37.3
-1.4
3.5
47.1
43
Minor BPS
47.7
-0.1
2.1
61.83
39

Associated Gene:

Gene:
TACC3
Ensembl Gene ID:
ENSAPLG00000016198
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020289
24501697 - 24518138
16442