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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24502516_24502662_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24502516 - 24502662
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTTT
5'SS Class:
major
3'SS Sequence:
CCCTTTCTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCTTTCTTAAAG
Flanking Amino Acid:
PPKSVAKAMKVTFQTPLRDP
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
72.8
39.1
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
73.1
0.52
1
73.6
29
Minor 5ss
40.6
-1
3.8
63.6
48.1
Minor BPS
64.7
0.32
1.5
63.72
44.3

Associated Gene:

Gene:
TACC3
Ensembl Gene ID:
ENSAPLG00000016198
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023462
24502335 - 24541857
39523
ENSAPLT00000020289
24501697 - 24518138
16442
ENSAPLT00000016936
24502335 - 24550803
48469