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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24502809_24505214_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24502809 - 24505214
Intron Length:
2406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTAATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CCTTTTTTAATG
Flanking Amino Acid:
DDLLSAPVSIDTSLQKAEAE
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.1
0.81
0.8
82.5
32.8
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
64.7
0.32
1.3
61.64
41.7

Associated Gene:

Gene:
TACC3
Ensembl Gene ID:
ENSAPLG00000016198
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023462
24502335 - 24541857
39523
ENSAPLT00000020289
24501697 - 24518138
16442
ENSAPLT00000016936
24502335 - 24550803
48469