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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24509885_24509972_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24509885 - 24509972
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTACT
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
AGCACTGGAATA
Flanking Amino Acid:
TSIMAVPPQYGPVSDLSKLL
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
75.3
40.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
82.9
0.74
0.8
81.2
36.5
Minor 5ss
36.5
-1.5
3
43.6
43.6
Minor BPS
41.9
-0.6
2
47.73
36.5

Associated Gene:

Gene:
TACC3
Ensembl Gene ID:
ENSAPLG00000016198
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023462
24502335 - 24541857
39523
ENSAPLT00000020289
24501697 - 24518138
16442
ENSAPLT00000016936
24502335 - 24550803
48469