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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24510085_24510796_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24510085 - 24510796
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGGATG
5'SS Class:
major
3'SS Sequence:
TATCTCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AATCACTTAACT
Flanking Amino Acid:
LDLLGTFTTSDTDSLIPDSF
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
66.7
44.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79
0.65
0.8
72.8
31.7
Minor 5ss
38.8
-1.3
3.4
58.6
45.6
Minor BPS
71
0.74
1.5
82.96
37

Associated Gene:

Gene:
TACC3
Ensembl Gene ID:
ENSAPLG00000016198
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023462
24502335 - 24541857
39523
ENSAPLT00000020289
24501697 - 24518138
16442
ENSAPLT00000016936
24502335 - 24550803
48469