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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24514350_24515253_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24514350 - 24515253
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCAATTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
CTATCATTAATG
Flanking Amino Acid:
EFEGTITQMMEDAQKQKELS
Intron Amino Acid Position:
745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
72
0.49
0.9
69.6
36.4
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
63
0.27
1.7
65.41
42.5

Associated Gene:

Gene:
TACC3
Ensembl Gene ID:
ENSAPLG00000016198
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023462
24502335 - 24541857
39523
ENSAPLT00000020289
24501697 - 24518138
16442
ENSAPLT00000016936
24502335 - 24550803
48469