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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24515415_24516213_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24515415 - 24516213
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
CTTCCTGGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TAGTACATAAAA
Flanking Amino Acid:
QKEVLEGYHKNEEALKKYAE
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.7
36.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
63.8
0.31
1.1
60.7
40.2
Minor 5ss
40
-1.1
3.1
51.1
39.8
Minor BPS
49.8
-0
1.9
64.43
40.9

Associated Gene:

Gene:
TACC3
Ensembl Gene ID:
ENSAPLG00000016198
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023462
24502335 - 24541857
39523
ENSAPLT00000020289
24501697 - 24518138
16442
ENSAPLT00000016936
24502335 - 24550803
48469