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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24627078_24634845_F

Intron Information:

Intron Rank:
149119
Intron Class:
major
Intron Phase:
Intron Coordinates:
24627078 - 24634845
Intron Length:
7768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGAATCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TGTACCTTACGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
66.7
0.41
1
57.8
39
Major PPT
71
0.47
1
61.9
44.1
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
57.3
0.31
2
77.46
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030178
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039363
24626995 - 24636683
9689