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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24634001_24634845_F

Intron Information:

Intron Rank:
149117
Intron Class:
major
Intron Phase:
Intron Coordinates:
24634001 - 24634845
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TGAATCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TGTACCTTACGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
66.7
0.41
1
57.8
39
Major PPT
71
0.47
1
61.9
44.1
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
57.3
0.31
2
77.46
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030178
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036883
24632978 - 24636291
3314