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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24635872_24635972_F

Intron Information:

Intron Rank:
149108
Intron Class:
major
Intron Phase:
Intron Coordinates:
24635872 - 24635972
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
ATCTGTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAA
U12 Branch Point Sequence:
TGTATCTGTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
64.4
0.36
1.2
57.3
41.7
Major PPT
72.7
0.51
0.9
66.8
38.7
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
48.9
-0
1.8
69.95
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030178
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025012
24622164 - 24636683
14520
ENSAPLT00000033281
24622164 - 24650798
28635