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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24636116_24636334_F

Intron Information:

Intron Rank:
149109
Intron Class:
major
Intron Phase:
Intron Coordinates:
24636116 - 24636334
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TACCTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
AAACTTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
74.2
0.6
1
67
39.4
Major PPT
70.6
0.46
0.8
65.3
30.2
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
51.2
0.12
1.6
65.43
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030178
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025012
24622164 - 24636683
14520
ENSAPLT00000039363
24626995 - 24636683
9689
ENSAPLT00000033281
24622164 - 24650798
28635