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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24744350_24750802_F

Intron Information:

Intron Rank:
131971
Intron Class:
major
Intron Phase:
Intron Coordinates:
24744350 - 24750802
Intron Length:
6453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGTGCCTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
65.7
0.35
1
60.1
40.2
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
60.8
0.2
1.7
65.07
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020853
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047521
24743348 - 24752311
8964