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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24767430_24767985_R

Intron Information:

Intron Rank:
138589
Intron Class:
major
Intron Phase:
Intron Coordinates:
24767430 - 24767985
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTTAGATCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
79.2
0.72
1
75
40
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
48.4
-0.1
2.2
70
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022043
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042858
24767192 - 24768206
1015
ENSAPLT00000020773
24767192 - 24770511
3320