Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24768079_24770428_R

Intron Information:

Intron Rank:

138590

Intron Class:

major

Intron Phase:

Intron Coordinates:

24768079 - 24770428

Intron Length:

2350

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTGAGTATC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TCTGTCTAACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

83.4

Major BPS

71.2

0.53

70.3

31.9

Major PPT

93.2

0.97

0.6

92.1

18.5

Minor 5ss

37.3

-1.4

2.9

50.4

39.3

Minor BPS

48.9

-0

70.32

47.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020773

24767192 - 24770511

3320