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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24957066_24976080_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24957066 - 24976080
Intron Length:
19015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CTGCTCTTACTC
Flanking Amino Acid:
AAERSGGQPAEYLRSETAFL
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
51
0.01
1.6
58.54
41.3

Associated Gene:

Gene:
FGFR3
Ensembl Gene ID:
ENSAPLG00000016333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018436
24956830 - 25009824
52995
ENSAPLT00000017079
24956830 - 25009824
52995