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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2498873_2499983_R

Intron Information:

Intron Rank:
151707
Intron Class:
major
Intron Phase:
Intron Coordinates:
2498873 - 2499983
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.8
85
28.8
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029172
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033181
2498797 - 2501232
2436