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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24991525_24992038_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24991525 - 24992038
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
GGTAAATTAAGA
Flanking Amino Acid:
IRHTYQLDVLERSPHRPILQ
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
79
0.65
0.9
75.9
38
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
45.2
-0.3
2
56.48
41.6

Associated Gene:

Gene:
FGFR3
Ensembl Gene ID:
ENSAPLG00000016333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018436
24956830 - 25009824
52995
ENSAPLT00000017079
24956830 - 25009824
52995