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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24992230_24995911_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24992230 - 24995911
Intron Length:
3682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTACT
5'SS Class:
major
3'SS Sequence:
TCTATTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GTTTACTGAAGT
Flanking Amino Acid:
DGTPYVTVLKSWISKNAEAD
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
76.5
38.7
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
83.1
0.74
0.8
77.4
31.2
Minor 5ss
33.3
-1.9
2.9
44
43.3
Minor BPS
57.1
0.3
2
79.08
42.4

Associated Gene:

Gene:
FGFR3
Ensembl Gene ID:
ENSAPLG00000016333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018436
24956830 - 25009824
52995