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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24992230_24997122_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24992230 - 24997122
Intron Length:
4893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTACT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTCTATATGT
Flanking Amino Acid:
DGTPYVTVLKTAGVNTTDKE
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
76.5
38.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
82
0.72
0.6
78.4
23.4
Minor 5ss
33.3
-1.9
2.9
44
43.3
Minor BPS
48
-0
2.1
72.16
45.1

Associated Gene:

Gene:
FGFR3
Ensembl Gene ID:
ENSAPLG00000016333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017079
24956830 - 25009824
52995