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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24997268_24999845_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24997268 - 24999845
Intron Length:
2578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCCT
5'SS Class:
major
3'SS Sequence:
TGTCACCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
CCATCCTGACTG
Flanking Amino Acid:
HHSAWLTVLPAEELMEMDDS
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.9
40.2
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
74.3
0.55
0.9
66.6
35.2
Minor 5ss
43
-0.8
2.8
60.4
43.9
Minor BPS
47.3
-0.3
1.8
48.5
45.3

Associated Gene:

Gene:
FGFR3
Ensembl Gene ID:
ENSAPLG00000016333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017079
24956830 - 25009824
52995