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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25001203_25002418_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25001203 - 25002418
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TTTTCTTTCTCT
Flanking Amino Acid:
AITVAVKMLKDDATDKDLSD
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
84.6
0.78
0.8
77.2
37.1
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
47.9
-0
3.6
87.39
38.7

Associated Gene:

Gene:
FGFR3
Ensembl Gene ID:
ENSAPLG00000016333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017079
24956830 - 25009824
52995
ENSAPLT00000018436
24956830 - 25009824
52995