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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25003196_25004535_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25003196 - 25004535
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCACCTTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTGACT
Flanking Amino Acid:
RGMEYLASQKCIHRDLAARN
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.7
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77
0.61
0.8
71.4
32.7
Minor 5ss
40.1
-1.1
2.9
49.5
41.1
Minor BPS
68.6
0.67
1.6
85.02
34.8

Associated Gene:

Gene:
FGFR3
Ensembl Gene ID:
ENSAPLG00000016333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018436
24956830 - 25009824
52995
ENSAPLT00000017079
24956830 - 25009824
52995