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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25007717_25008332_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25007717 - 25008332
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
TCATGCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTCCCTGTCATG
Flanking Amino Acid:
MDKPANCTHDLYMIMRECWH
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
61.8
38.8
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
68.9
0.43
0.9
61.5
34.8
Minor 5ss
29.5
-2.3
3.2
40.9
45.4
Minor BPS
42.7
-0.7
2.3
51.64
43.9

Associated Gene:

Gene:
FGFR3
Ensembl Gene ID:
ENSAPLG00000016333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017079
24956830 - 25009824
52995
ENSAPLT00000018436
24956830 - 25009824
52995