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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25050942_25062245_R

Intron Information:

Intron Rank:
131717
Intron Class:
major
Intron Phase:
Intron Coordinates:
25050942 - 25062245
Intron Length:
11304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGATTTA
5'SS Class:
major
3'SS Sequence:
TTTCTATATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGATTCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
68.3
39.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
82.6
0.73
0.9
78.2
34.2
Minor 5ss
41.3
-1
3.2
48.5
47.7
Minor BPS
56
0.27
1.8
74.32
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018048
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027011
25048900 - 25062393
13494