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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25084591_25086085_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25084591 - 25086085
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GATGTTCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTGTTTTAAAT
Flanking Amino Acid:
GKIDIDNVVKVVELIDKEDI
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.6
0.35
1
59.5
41.7
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
58.2
0.34
1.5
70.46
41

Associated Gene:

Gene:
LETM1
Ensembl Gene ID:
ENSAPLG00000003508
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033297
25084441 - 25119856
35416
ENSAPLT00000031446
25084296 - 25107504
23209
ENSAPLT00000022428
25084441 - 25108373
23933
ENSAPLT00000045986
25084441 - 25109856
25416