About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25085368_25086085_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25085368 - 25086085
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
CCTTTATTACCC
Flanking Amino Acid:
GKIDIDNVVKNF
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
49.9
-0
1.9
62.34
43.5

Associated Gene:

Gene:
LETM1
Ensembl Gene ID:
ENSAPLG00000003508
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003592
25085360 - 25107504
22145