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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25093283_25095205_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25093283 - 25095205
Intron Length:
1923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
GCATTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATAGACC
Flanking Amino Acid:
TTLQTLPESVAKEAQVKVAE
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.1
0.52
0.9
70.2
40.1
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
54.9
0.14
2
74.32
36.6

Associated Gene:

Gene:
LETM1
Ensembl Gene ID:
ENSAPLG00000003508
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022428
25084441 - 25108373
23933
ENSAPLT00000045986
25084441 - 25109856
25416
ENSAPLT00000003592
25085360 - 25107504
22145
ENSAPLT00000033297
25084441 - 25119856
35416
ENSAPLT00000031446
25084296 - 25107504
23209
ENSAPLT00000027735
25085901 - 25107504
21604