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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25099923_25101671_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25099923 - 25101671
Intron Length:
1749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
PSTFETKSKKEERLKKQLRV
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
LETM1
Ensembl Gene ID:
ENSAPLG00000003508
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022428
25084441 - 25108373
23933
ENSAPLT00000045986
25084441 - 25109856
25416
ENSAPLT00000003592
25085360 - 25107504
22145
ENSAPLT00000033297
25084441 - 25119856
35416
ENSAPLT00000031446
25084296 - 25107504
23209
ENSAPLT00000027735
25085901 - 25107504
21604