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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25106055_25107421_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25106055 - 25107421
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAATCCTTGAAT
Flanking Amino Acid:
SCTSLRLTNKMTVHFKYCTS
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.3
0.77
0.9
86.8
24.4
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
72.4
0.79
1.4
82.45
38.2

Associated Gene:

Gene:
LETM1
Ensembl Gene ID:
ENSAPLG00000003508
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003592
25085360 - 25107504
22145
ENSAPLT00000033297
25084441 - 25119856
35416
ENSAPLT00000031446
25084296 - 25107504
23209
ENSAPLT00000027735
25085901 - 25107504
21604
ENSAPLT00000022428
25084441 - 25108373
23933
ENSAPLT00000045986
25084441 - 25109856
25416