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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25107480_25109843_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25107480 - 25109843
Intron Length:
2364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAGGTGGG
5'SS Class:
major
3'SS Sequence:
GGTGTTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATGCTAATAACT
Flanking Amino Acid:
MHLQSNLGDRACLS
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.2
51.7
45.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.4
0.55
0.9
65.8
45.3
Minor 5ss
32
-2.1
3.4
35.7
42.3
Minor BPS
48.9
-0
1.9
70.03
40.3

Associated Gene:

Gene:
LETM1
Ensembl Gene ID:
ENSAPLG00000003508
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045986
25084441 - 25109856
25416