Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2512525_2513150_F

Intron Information:

Intron Rank:

128419

Intron Class:

major

Intron Phase:

Intron Coordinates:

2512525 - 2513150

Intron Length:

626

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTATG

5'SS Class:

major

3'SS Sequence:

TGCCTCCTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

GCCTCCTTACAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

1.1

75.1

40.8

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

79.2

0.66

0.8

72.2

32.5

Minor 5ss

42.3

-0.9

2.9

61.4

42.8

Minor BPS

49.9

-0.1

1.9

52.97

47.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019157

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024874

2439701 - 2546313

106613

ENSAPLT00000022453

2392790 - 2546313

153524