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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2513315_2531794_F

Intron Information:

Intron Rank:
128427
Intron Class:
major
Intron Phase:
Intron Coordinates:
2513315 - 2531794
Intron Length:
18480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTATG
5'SS Class:
major
3'SS Sequence:
CTTTTTCCACCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAGAC
U12 Branch Point Sequence:
TCTTTTTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
0.9
72.3
38.6
Major BPS
56.7
0.17
1.1
54.6
40.9
Major PPT
80.7
0.69
0.8
74.8
34.9
Minor 5ss
40.1
-1.1
2.7
47.3
42.8
Minor BPS
49.5
-0
1.9
65.33
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019157
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026231
2510474 - 2534290
23817