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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25136110_25155209_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25136110 - 25155209
Intron Length:
19100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGAG
5'SS Class:
major
3'SS Sequence:
TGTATTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTTTTTGTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.3
72.3
39.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83.1
0.75
0.9
76.6
37.5
Minor 5ss
27.4
-2.6
2.9
31.5
42.8
Minor BPS
50.1
0.09
1.7
71.39
40.7

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040268
25135563 - 25218321
82759