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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25155307_25155411_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25155307 - 25155411
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGAG
5'SS Class:
major
3'SS Sequence:
TGCCACTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCACAA
U12 Branch Point Sequence:
CTTTCTGCCACT
Flanking Amino Acid:
RKINYIKMKQEGVMQKYNGH
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
57.1
42.4
Major BPS
47.8
-0.1
1
52.7
34.2
Major PPT
68.5
0.42
1
61.2
39
Minor 5ss
34.2
-1.8
3.6
46.7
48.6
Minor BPS
44.9
-0.3
2.5
71.32
46.1

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040268
25135563 - 25218321
82759