About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25155835_25173930_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25155835 - 25173930
Intron Length:
18096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TCTTTTTTTAAG
Flanking Amino Acid:
SKTSSSPEKKAPAKKDLTQS
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.3
0.77
0.9
90.2
22.9
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
50.2
-0.1
1.8
59.36
42.7

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040268
25135563 - 25218321
82759
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052
ENSAPLT00000043133
25155210 - 25218261
63052