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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25174097_25181549_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25174097 - 25181549
Intron Length:
7453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
AATTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACTTTATTAAAT
Flanking Amino Acid:
PVLHAYTKLKGQKKSFRQYH
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.4
0.71
0.9
77.9
40.2
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
60.8
0.42
1.7
76.55
39.6

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052
ENSAPLT00000043133
25155210 - 25218261
63052
ENSAPLT00000040268
25135563 - 25218321
82759