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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25182609_25187239_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25182609 - 25187239
Intron Length:
4631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCATGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTTTTTAATA
Flanking Amino Acid:
LVFCQKHRDEVVAEHPDASS
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
67.4
0.39
1
61.5
39.1
Minor 5ss
35.1
-1.7
2.8
45
42.9
Minor BPS
75.3
0.79
1.1
78
33.3

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040268
25135563 - 25218321
82759
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052
ENSAPLT00000043133
25155210 - 25218261
63052