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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25188499_25189953_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25188499 - 25189953
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAATTGAA
5'SS Class:
major
3'SS Sequence:
CCCCCATCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATGTAAGT
Flanking Amino Acid:
DSPKRRSRSRSNLHGNKRNQ
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
73.2
30.9
Major BPS
100
1.24
0.5
100
0
Major PPT
55.2
0.12
1
51.8
30.4
Minor 5ss
33.8
-1.8
3.2
40.3
40.1
Minor BPS
46.7
-0.1
2.4
73.99
42.9

Associated Gene:

Gene:
NSD2
Ensembl Gene ID:
ENSAPLG00000003770
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040268
25135563 - 25218321
82759
ENSAPLT00000040197
25143984 - 25218261
74278
ENSAPLT00000003882
25155210 - 25218261
63052
ENSAPLT00000043133
25155210 - 25218261
63052